Skinnytaste > Baked Breads and Cakes > Apple Cinnamon Muffins

Apple Cinnamon Muffins

This post may contain affiliate links. Read my disclosure policy.

These homemade apple muffins are made with fresh apples, applesauce, cinnamon, crunchy walnuts, and a lightly sweet granola topping for extra texture and flavor.

An apple muffin with a bite taken out.

Apple Muffins

It’s apple season, and I picked up some apples at the farmers market last week to make a big batch of crock pot applesauce. Last year, I used that applesauce to make apple bread, which I love. It inspired me to experiment with almond meal, wheat bran, and flax to create this delicious, high fiber apple muffin recipe. I love how moist they turned out, and I saved the extra in my refrigerator to eat for the week—they stayed moist for days! For more of my favorite apple breakfast recipes, don’t miss my Apple Bread, Apple Scones, or Apple Pie Overnight Oats.

Why You’ll Love These Apple Muffins

Gina @ Skinnytaste.com

I love going apple picking on Long Island in September and usually wind up with more apple than we can eat, so we bake them into muffins, quick breads and turnovers! This recipe is so good, loaded with apples and so delicious!

  • Perfect for Fall: Baking these apple cinnamon muffins will make your house smell like fall. They’re cozy and delicious.
  • Great for Fresh Apples: Fresh apples add natural sweetness, making these muffins moist and tender.
  • Dietary Restrictions: They are vegetarian, Weight Watchers-friendly, high-fiber, and dairy-free.

If you make this healthy apple muffin recipe, I would love to see it. Tag me in your photos or videos on Instagram, TikTok, or Facebook!

Gina signature

Ingredients You’ll Need

While the ingredient list may be longer than most apple muffin recipes, don’t let it intimidate you! You probably have more of the ingredients in your pantry than you realize. Find the exact measurements in the recipe card below.

  • Apples: Use sweet apples like honey crisp. Peel, core, and grate (with a microplane or box grater) the large apple. The grated apple provides texture and moisture.
  • Apple Marinade: Combine cinnamon, honey, and lemon juice to create a flavorful marinade for the grated apples.
  • Flour: I increased the fiber in these healthy apple muffins by using 3 different types of flour: white whole wheat, coarse wheat bran flour, and almond meal. All purpose flour can be used in place of while whole wheat.
  • Baking Soda: helps the muffins rise and improves their texture.
  • Spices: Ground cinnamon and nutmeg give these muffins a warm, fall flavor.
  • Salt balances the sweetness and enhances the overall flavors.
  • Ground Flax Seeds also increase the fiber content.
  • Applesauce adds sweetness, moisture, and nutrients like fiber, vitamin C, and potassium. You can use store-bought unsweetened applesauce or try my homemade slow cooker applesauce recipe.
  • Brown Sugar sweetens the muffins.
  • Oil: Use a little coconut or canola oil to add moisture without many calories.
  • Egg Whites help bind the ingredients together.
  • Vanilla Extract for subtle warmth and sweetness
  • Chopped Walnuts for a little crunch
  • Granola: Top each muffin with a bit of granola. I love Purely Elizabeth granola but use whatever you prefer.

Variation Ideas

  • Honey: You can swap the honey for maple syrup or agave if that’s what you have on hand. Maple adds a nice fall flavor, while agave keeps things a bit more neutral.
  • Spices: Try using pumpkin pie spice instead of cinnamon and nutmeg for a warm, cozy twist. It’s especially great in the fall.
  • Swap the sugar: To lower the added sugar, replace the brown sugar with a monk fruit brown sugar blend. It keeps the sweetness without the extra calories.
  • Use one kind of flour: If you don’t want to buy all three flours, you can simplify by using just white whole wheat flour. The muffins will still bake up nicely and have great texture.
  • Make the gluten free: Replace white whole wheat and wheat bran flours with a gluten-free mix, like Cup4Cup.
  • Nut Allergy: Replace almond meal with white whole wheat flour and omit the nuts. If you still want the crunch the nuts provide, try adding pepitas.
  • No granola topping: Don’t have granola? A light sprinkle of oats or chopped nuts works just fine. You can even skip it entirely for a simpler muffin.
  • Add-ins: Stir in a handful of raisins, dried cranberries, or chopped dates for extra sweetness.

How to Make Apple Muffins

Here’s how to make these easy apple cinnamon muffins. Scroll to the bottom for the complete instructions.

  1. Make the apple mixture: Combine the grated apples with cinnamon, honey, and lemon juice.
  2. Mix dry ingredients: Whisk the 3 flours, flax, baking soda, nutmeg, cinnamon, and salt.
  3. Mix wet Ingredients: Beat the applesauce, oil, egg whites, sugar, and vanilla with an electric mixer or stand mixer until thick.
  4. Combine the wet and dry ingredients: Slowly add the dry ingredients to the bowl with the wet ingredients and blend at low speed until combined. Fold in the apples and walnuts.
  5. Bake the Muffins: Place muffin liners in a muffin pan and spray with oil. Pour the muffin batter into the prepared muffin cups. Top each with some granola and bake at 350°F for about 35 minutes. Insert a toothpick into the center of a muffin–when it comes out clean, they’re ready.

Proper Storage

  • Counter or fridge: Keep the muffins in an airtight container at room temperature for up to 1 day, or refrigerate for up to a week.
  • How to freeze: Freeze in a zip-top bag or container for up to 3 months. Let them thaw in the fridge overnight, or microwave straight from frozen in 20–30 second bursts until warm.
Healthy Apple Muffins on a counter.
Skinnytaste High Protein cookbook protein

Apple Muffins

5 from 8 votes
4
Cals:150
Protein:4
Carbs:30
Fat:5
Fiber:4
These healthy, high-fiber, whole-grain apple muffins are made with fresh sweet apples, applesauce, walnuts, and a granola topping.
Course: Brunch, Snack
Cuisine: American
Apple Muffins
Prep: 25 minutes
Cook: 35 minutes
Total: 1 hour
Yield: 12
Serving Size: 1 muffin

Ingredients

  • 1 cup large apple, peeled, cored and grated
  • 3/4 tsp cinnamon
  • 1 tbsp honey
  • 1/2 tsp lemon juice
  • 3/4 cup white whole wheat flour , (King Arthur) or all purpose flour
  • 3/4 cup wheat bran flour, (Bob's Redmill)
  • 1/4 cup almond meal
  • 1 tsp baking soda
  • 1/8 tsp ground nutmeg
  • 1/4 tsp salt
  • 1 1/2 tbsp ground flax seeds
  • 1 1/2 cup applesauce , homemade or store bought
  • 3/4 cup brown sugar, not packed
  • 1 tbsp coconut oil, or canola
  • 2 large egg whites
  • 2 tsp vanilla extract
  • 1 oz walnuts, chopped
  • 1 oz granola, such as Purely Elizabeth

Instructions

  • In a medium bowl combine grated apple, 1/4 tsp cinnamon, honey, and lemon juice. Set aside.
  • Preheat oven to 350°F. Line a muffin tin with liners and lightly spray them with cooking spray.
  • In a medium bowl, combine flour, bran, almond meal, flax, baking soda, nutmeg, cinnamon, and salt with a wire whisk; set aside.
  • In a large bowl mix applesauce, coconut oil, egg whites, sugar, and vanilla; beat at medium speed until thick. Scrape down sides of the bowl.
  • Add the flour mixture, then blend at low speed until combined. Do not over mix. Fold in apples and walnuts.
  • Pour batter into muffin tins and top each muffin with 1/2 teaspoon of granola, then bake in the center rack about 35 minutes, or until a toothpick inserted in the center comes out clean.
  • Let them cool and serve room temperature.

Last Step:

Please leave a rating and comment letting us know how you liked this recipe! This helps our business to thrive and continue providing free, high-quality recipes for you.

Nutrition

Serving: 1 muffin, Calories: 150 kcal, Carbohydrates: 30 g, Protein: 4 g, Fat: 5 g, Sodium: 170 mg, Fiber: 4 g, Sugar: 19 g

Categories:

Behind the Scenes Torn Paper